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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THCA cis rs9902453 1 rs4465649 chr17:28394747 GIT1 chr17:27900487-27916610:- -0.28 -6.57 1.35E-10 Coffee consumption (cups per day)
THCA cis rs9902453 1 rs4465649 chr17:28394747 LRRC37B2 chr17:28903483-28992715:+ -0.18 -3.85 0.000134 Coffee consumption (cups per day)
THCA cis rs9902453 1 rs4465649 chr17:28394747 SSH2 chr17:27952965-28257018:- -0.33 -7.54 2.31E-13 Coffee consumption (cups per day)
THCA cis rs9902453 1 rs4465649 chr17:28394747 TP53I13 chr17:27895739-27900174:+ -0.2 -5.29 1.87E-7 Coffee consumption (cups per day)
THCA cis rs9902453 1 rs4465650 chr17:28396721 ANKRD13B chr17:27916801-27941778:+ 0.36 8.9 1.16E-17 Coffee consumption (cups per day)
THCA cis rs9902453 1 rs4465650 chr17:28396721 CORO6 chr17:27941774-27948441:- 0.51 11.91 7.85E-29 Coffee consumption (cups per day)
THCA cis rs9902453 1 rs4465650 chr17:28396721 EFCAB5 chr17:28256874-28435469:+ 0.6 11.44 5.96E-27 Coffee consumption (cups per day)
THCA cis rs9902453 1 rs4465650 chr17:28396721 GIT1 chr17:27900487-27916610:- 0.29 6.74 4.71E-11 Coffee consumption (cups per day)
THCA cis rs9902453 1 rs4465650 chr17:28396721 LRRC37B2 chr17:28903483-28992715:+ 0.18 3.88 0.000117 Coffee consumption (cups per day)
THCA cis rs9902453 1 rs4465650 chr17:28396721 SSH2 chr17:27952965-28257018:- 0.34 7.7 7.96E-14 Coffee consumption (cups per day)
THCA cis rs9902453 1 rs4465650 chr17:28396721 TP53I13 chr17:27895739-27900174:+ 0.2 5.39 1.13E-7 Coffee consumption (cups per day)
THCA cis rs7679 1 rs4465830 chr20:44585420 WFDC3 chr20:44402847-44420547:- -0.28 -4.05 5.91E-5 HDL cholesterol;Triglycerides;Gut microbiota (functional units)
THCA cis rs7655841 1 rs4466058 chr4:129923879 C4orf33 chr4:130014829-130033842:+ -0.59 -9.37 2.94E-19 Chronic obstructive pulmonary disease (moderate to severe)
THCA cis rs6479891 1 rs4466712 chr10:64933268 LOC84989 chr10:65224989-65226320:+ 0.27 4.33 1.86E-5 Arthritis (juvenile idiopathic)
THCA cis rs6479891 1 rs4466712 chr10:64933268 NRBF2 chr10:64893007-64914785:+ 0.28 4.71 3.22E-6 Arthritis (juvenile idiopathic)